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publications [2019/04/17 22:04]
shyam
publications [2019/09/21 17:17]
shyam [Journal papers and conference proceedings]
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 ===== Journal papers and conference proceedings ===== ===== Journal papers and conference proceedings =====
 +
 +**94. Interactive NLP in clinical care: Identifying incidental findings in radiology reports**. \\
 +//Trivedi G, Dadashzadeh E, Handzel R, Chapman W, __Visweswaran, S__, Hochheiser H//. \\ 
 +Applied Clinical Informatics. 2019; 10(04): 655-669. \\
 +([[https://www.thieme-connect.de/products/ejournals/abstract/10.1055/s-0039-1695791|abstract]])
 +
 +**93. Identifying incidental findings from radiology reports of trauma patients: An evaluation of automated feature representation methods**. \\
 +//Trivedi G, Hong C, Dadashzadeh E, Handzel R, Hochheiser H, __Visweswaran, S__//. \\ 
 +International Journal of Medical Informatics. 2019 Sep 1;129:81-7. \\
 +([[https://www.sciencedirect.com/science/article/pii/S138650561831061X|abstract]])
 +
 +**92. The “All of Us” Research Program**. \\
 +//All of Us Research Program Investigators//. \\
 +New England Journal of Medicine. 2019 Aug 15;381(7):668-76. \\
 +([[https://www.nejm.org/doi/pdf/10.1056/NEJMsr1809937|abstract]])
 +
 +**91. Derivation, validation, and potential treatment implications of novel clinical phenotypes for sepsis**. \\
 +//Seymour CW, Kennedy J, Wang S, Chang C-CH, Elliot CF, Xu Z, Berry S, Clermont G, Cooper G, Gomez H, Huang DT, Kellum JA, Mi Q, Opal SM, Talisa V, Poll T, __Visweswaran S__, Vodovotz Y, Weiss JC, Yealy DM, Yende S, Angus DC//. \\
 +JAMA. 2019 May 28;321(20):2003-17. \\
 +([[https://www.dbmi.pitt.edu/sites/default/files/derivationvalidation.pdf|paper]])
  
 **90. Approximate kernel-based conditional independence tests for fast non-parametric causal discovery**. \\ **90. Approximate kernel-based conditional independence tests for fast non-parametric causal discovery**. \\
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 //King, AJ, Cooper, GF, Hochheiser, H, Clermont, G, Hauskrecht, M, __Visweswaran, S__//. \\ //King, AJ, Cooper, GF, Hochheiser, H, Clermont, G, Hauskrecht, M, __Visweswaran, S__//. \\
 In: AMIA Annual Symposium Proceedings. 2018 Nov 7. \\ In: AMIA Annual Symposium Proceedings. 2018 Nov 7. \\
 +([[https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6371238/|abstract & paper]])
  
 **87. Instance-specific Bayesian network structure learning**. \\ **87. Instance-specific Bayesian network structure learning**. \\
 //Jabbari F, __Visweswaran S__, Cooper GF//. \\ //Jabbari F, __Visweswaran S__, Cooper GF//. \\
 In: The 9th International Conference on Probabilistic Graphical Models. 2018 Sep 11 – 14. \\ In: The 9th International Conference on Probabilistic Graphical Models. 2018 Sep 11 – 14. \\
 +([[http://proceedings.mlr.press/v72/jabbari18a.html|abstract & paper]])
  
 **86. Accrual to Clinical Trials (ACT): A Clinical and Translational Science Award Consortium network**. \\ **86. Accrual to Clinical Trials (ACT): A Clinical and Translational Science Award Consortium network**. \\
 //__Visweswaran S__, Becich MJ, D’Itri VS, Sendro ER, MacFadden D, Anderson NR, Allen KA, Ranganathan D, Murphy SN, Morrato EH, Pincus HA, Toto R, Firestein GS, Nadler LM, Reis SE//. \\ //__Visweswaran S__, Becich MJ, D’Itri VS, Sendro ER, MacFadden D, Anderson NR, Allen KA, Ranganathan D, Murphy SN, Morrato EH, Pincus HA, Toto R, Firestein GS, Nadler LM, Reis SE//. \\
 JAMIA Open. 2018 Aug 21. \\ JAMIA Open. 2018 Aug 21. \\
 +([[https://academic.oup.com/jamiaopen/article/1/2/147/5077449|abstract & paper]])
  
 **85. Accelerating innovation in multidisciplinary scientific teams through visual analytics**. \\ **85. Accelerating innovation in multidisciplinary scientific teams through visual analytics**. \\
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 In: Science of Team Science (SciTS) Conference. 2018 May 21-24. \\ In: Science of Team Science (SciTS) Conference. 2018 May 21-24. \\
 (//Outstanding Paper Award at the Science of Team Science (SciTS) Conference, 2018//) \\ (//Outstanding Paper Award at the Science of Team Science (SciTS) Conference, 2018//) \\
 +([[https://sts.memberclicks.net/assets/2018_SciTS_docs/Presentations/Bhavnani_Accelerating%20Innovation.pdf|presentation]])
  
 **84. A novel representation of vaccine efficacy trial datasets for use in computer simulation of vaccination policy**. \\ **84. A novel representation of vaccine efficacy trial datasets for use in computer simulation of vaccination policy**. \\
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 **83. Fast causal inference with non-random missingness by test-wise deletion**. \\ **83. Fast causal inference with non-random missingness by test-wise deletion**. \\
 //Strobl, EV, __Visweswaran, S__, Spirtes, PL//. \\ //Strobl, EV, __Visweswaran, S__, Spirtes, PL//. \\
-International Journal of Data Science and Analytics. 2018 Jan 9. \\+International Journal of Data Science and Analytics. 2018 Aug; 6(1):47-62. \\
 ([[http://dx.doi.org/10.1007/s41060-017-0094-6|paper]]) ([[http://dx.doi.org/10.1007/s41060-017-0094-6|paper]])
  
 **82. Translational bioinformatics in mental health: Open access data sources and computational biomarker discovery**. \\ **82. Translational bioinformatics in mental health: Open access data sources and computational biomarker discovery**. \\
 //Tenenbaum, JD, Bhuvaneshwar, K, Gagliardi, JP, Hollis, KF, Jia, P, Ma, L, Nagarajan, R, Rakesh, G, Subbian, V, __Visweswaran, S__, Zhao, Z, Rozenblit, L//. \\ //Tenenbaum, JD, Bhuvaneshwar, K, Gagliardi, JP, Hollis, KF, Jia, P, Ma, L, Nagarajan, R, Rakesh, G, Subbian, V, __Visweswaran, S__, Zhao, Z, Rozenblit, L//. \\
-Briefings in Bioinformatics. 2017 Nov 27. \\+Briefings in Bioinformatics. 2019 May 21;20(3):842-856. \\
 ([[http://www.ncbi.nlm.nih.gov/pubmed/29186302|abstract]]) ([[http://dx.doi.org/10.1093/bib/bbx157|paper]]) ([[http://www.ncbi.nlm.nih.gov/pubmed/29186302|abstract]]) ([[http://dx.doi.org/10.1093/bib/bbx157|paper]])
  
-**81. Methylation differences reveal heterogeneity in preterm pathophysiology: results from bipartite network analyses**. \\+**81. Methylation differences reveal heterogeneity in preterm pathophysiology: Results from bipartite network analyses**. \\
 //Bhavnani SK, Dang B, Kilaru V, Caro M, __Visweswaran S__, Saade G, Smith AK, Menon R//. \\ //Bhavnani SK, Dang B, Kilaru V, Caro M, __Visweswaran S__, Saade G, Smith AK, Menon R//. \\
-Journal of Perinatal Medicine. 2017 Jun 30. \\+Journal of Perinatal Medicine. 2018 Jul 26;46(5):509-521. \\
 ([[http://www.ncbi.nlm.nih.gov/pubmed/28665803|abstract]]) ([[http://dx.doi.org/10.1515/jpm-2017-0126|paper]])  ([[http://www.ncbi.nlm.nih.gov/pubmed/28665803|abstract]]) ([[http://dx.doi.org/10.1515/jpm-2017-0126|paper]])