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publications [2018/11/02 10:57]
shyam [Journal papers and conference proceedings] 		publications [2019/09/05 12:05]
shyam
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 ===== Journal papers and conference proceedings ===== ===== Journal papers and conference proceedings =====
  
-**89. Using machine learning to predict the information seeking behavior of clinicians using an electronic medical record system**. \\+**94. Interactive NLP in clinical care: Identifying incidental findings in radiology reports**. \\ 
 +//Trivedi G, Dadashzadeh E, Handzel R, Chapman W, __Visweswaran, S__, Hochheiser H//. \\  
 +Applied Clinical Informatics. 2019; 10(04): 655-669. \\ 
 +([[https://www.thieme-connect.de/products/ejournals/abstract/10.1055/s-0039-1695791|abstract]]) 
 + 
 +**93. Identifying incidental findings from radiology reports of trauma patients: An evaluation of automated feature representation methods**. \\ 
 +//Trivedi G, Hong C, Dadashzadeh E, Handzel R, Hochheiser H, __Visweswaran, S__//. \\  
 +International Journal of Medical Informatics. 2019 Sep 1;129:81-7. \\ 
 +([[https://www.sciencedirect.com/science/article/pii/S138650561831061X|abstract]]) 
 + 
 +**92. The “All of Us” Research Program**. \\ 
 +//All of Us Research Program Investigators//. \\ 
 +New England Journal of Medicine. 2019 Aug 15;381(7):668-76. \\ 
 +([[https://www.nejm.org/doi/pdf/10.1056/NEJMsr1809937|paper]]) 
 + 
 +**91. Derivation, validation, and potential treatment implications of novel clinical phenotypes for sepsis**. \\ 
 +//Seymour CW, Kennedy J, Wang S, Chang C-CH, Elliot CF, Xu Z, Berry S, Clermont G, Cooper G, Gomez H, Huang DT, Kellum JA, Mi Q, Opal SM, Talisa V, Poll T, __Visweswaran S__, Vodovotz Y, Weiss JC, Yealy DM, Yende S, Angus DC//. \\ 
 +JAMA. 2019 May 28;321(20):2003-17. \\ 
 +([[https://www.dbmi.pitt.edu/sites/default/files/derivationvalidation.pdf|paper]]) 
 + 
 +**90. Approximate kernel-based conditional independence tests for fast non-parametric causal discovery**. \\ 
 +//Strobl, EV, Zhang, K, __Visweswaran, S__//. \\ 
 +Journal of Causal Inference. 2019 Mar; 4(1):31-48. \\ 
 +([[https://arxiv.org/abs/1702.03877|abstract & paper]]) 
 + 
 +**89. Towards team-centered informatics: Accelerating innovation in multidisciplinary scientific teams through visual analytics**. \\ 
 +//Bhavnani SK, __Visweswaran S__, Divekar R, Brasier A//. \\  
 +The Journal of Applied Behavioral Science. 2019 Mar;55(1):50-72. \\ 
 +([[https://journals.sagepub.com/doi/full/10.1177/0021886318794606|abstract & paper]]) 
 + 
 +**88. Using machine learning to predict the information seeking behavior of clinicians using an electronic medical record system**. \\
 //King, AJ, Cooper, GF, Hochheiser, H, Clermont, G, Hauskrecht, M, __Visweswaran, S__//. \\ //King, AJ, Cooper, GF, Hochheiser, H, Clermont, G, Hauskrecht, M, __Visweswaran, S__//. \\
 In: AMIA Annual Symposium Proceedings. 2018 Nov 7. \\ In: AMIA Annual Symposium Proceedings. 2018 Nov 7. \\
 +([[https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6371238/|abstract & paper]])
  
-**88. Instance-specific Bayesian network structure learning**. \\+**87. Instance-specific Bayesian network structure learning**. \\
 //Jabbari F, __Visweswaran S__, Cooper GF//. \\ //Jabbari F, __Visweswaran S__, Cooper GF//. \\
 In: The 9th International Conference on Probabilistic Graphical Models. 2018 Sep 11 – 14. \\ In: The 9th International Conference on Probabilistic Graphical Models. 2018 Sep 11 – 14. \\
 +([[http://proceedings.mlr.press/v72/jabbari18a.html|abstract & paper]])
  
-**87. Accrual to Clinical Trials (ACT): A Clinical and Translational Science Award Consortium network**. \\+**86. Accrual to Clinical Trials (ACT): A Clinical and Translational Science Award Consortium network**. \\
 //__Visweswaran S__, Becich MJ, D’Itri VS, Sendro ER, MacFadden D, Anderson NR, Allen KA, Ranganathan D, Murphy SN, Morrato EH, Pincus HA, Toto R, Firestein GS, Nadler LM, Reis SE//. \\ //__Visweswaran S__, Becich MJ, D’Itri VS, Sendro ER, MacFadden D, Anderson NR, Allen KA, Ranganathan D, Murphy SN, Morrato EH, Pincus HA, Toto R, Firestein GS, Nadler LM, Reis SE//. \\
 JAMIA Open. 2018 Aug 21. \\ JAMIA Open. 2018 Aug 21. \\
 +([[https://academic.oup.com/jamiaopen/article/1/2/147/5077449|abstract & paper]])
  
-**86. Accelerating innovation in multidisciplinary scientific teams through visual analytics**. \\+**85. Accelerating innovation in multidisciplinary scientific teams through visual analytics**. \\
 //Bhavnani, SK, __Visweswaran, S__, Divekar, R//. \\ //Bhavnani, SK, __Visweswaran, S__, Divekar, R//. \\
 In: Science of Team Science (SciTS) Conference. 2018 May 21-24. \\ In: Science of Team Science (SciTS) Conference. 2018 May 21-24. \\
 (//Outstanding Paper Award at the Science of Team Science (SciTS) Conference, 2018//) \\ (//Outstanding Paper Award at the Science of Team Science (SciTS) Conference, 2018//) \\
 +([[https://sts.memberclicks.net/assets/2018_SciTS_docs/Presentations/Bhavnani_Accelerating%20Innovation.pdf|presentation]])
  
-**85. A novel representation of vaccine efficacy trial datasets for use in computer simulation of vaccination policy**. \\+**84. A novel representation of vaccine efficacy trial datasets for use in computer simulation of vaccination policy**. \\
 //Tajgardoon, M, Wagner, MM, __Visweswaran, S__, Zimmerman, RK//. \\ //Tajgardoon, M, Wagner, MM, __Visweswaran, S__, Zimmerman, RK//. \\
 In: AMIA Informatics Summit Proceedings. 2018 Mar 12-15. \\ In: AMIA Informatics Summit Proceedings. 2018 Mar 12-15. \\
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 ({{papers:2018_a_novel_representation_of_vaccine_efficacy_trial_datasets_for_use_in_computer_simulation_of_vaccination_policy.pdf|paper}}) ({{papers:2018_a_novel_representation_of_vaccine_efficacy_trial_datasets_for_use_in_computer_simulation_of_vaccination_policy.pdf|paper}})
  
-**84. Fast causal inference with non-random missingness by test-wise deletion**. \\+**83. Fast causal inference with non-random missingness by test-wise deletion**. \\
 //Strobl, EV, __Visweswaran, S__, Spirtes, PL//. \\ //Strobl, EV, __Visweswaran, S__, Spirtes, PL//. \\
-International Journal of Data Science and Analytics. 2018 Jan 9. \\+International Journal of Data Science and Analytics. 2018 Aug; 6(1):47-62. \\
 ([[http://dx.doi.org/10.1007/s41060-017-0094-6|paper]]) ([[http://dx.doi.org/10.1007/s41060-017-0094-6|paper]])
  
-**83. Translational bioinformatics in mental health: Open access data sources and computational biomarker discovery**. \\+**82. Translational bioinformatics in mental health: Open access data sources and computational biomarker discovery**. \\
 //Tenenbaum, JD, Bhuvaneshwar, K, Gagliardi, JP, Hollis, KF, Jia, P, Ma, L, Nagarajan, R, Rakesh, G, Subbian, V, __Visweswaran, S__, Zhao, Z, Rozenblit, L//. \\ //Tenenbaum, JD, Bhuvaneshwar, K, Gagliardi, JP, Hollis, KF, Jia, P, Ma, L, Nagarajan, R, Rakesh, G, Subbian, V, __Visweswaran, S__, Zhao, Z, Rozenblit, L//. \\
-Briefings in Bioinformatics. 2017 Nov 27. \\+Briefings in Bioinformatics. 2019 May 21;20(3):842-856. \\
 ([[http://www.ncbi.nlm.nih.gov/pubmed/29186302|abstract]]) ([[http://dx.doi.org/10.1093/bib/bbx157|paper]]) ([[http://www.ncbi.nlm.nih.gov/pubmed/29186302|abstract]]) ([[http://dx.doi.org/10.1093/bib/bbx157|paper]])
  
-**82. Methylation differences reveal heterogeneity in preterm pathophysiology: results from bipartite network analyses**. \\+**81. Methylation differences reveal heterogeneity in preterm pathophysiology: Results from bipartite network analyses**. \\
 //Bhavnani SK, Dang B, Kilaru V, Caro M, __Visweswaran S__, Saade G, Smith AK, Menon R//. \\ //Bhavnani SK, Dang B, Kilaru V, Caro M, __Visweswaran S__, Saade G, Smith AK, Menon R//. \\
-Journal of Perinatal Medicine. 2017 Jun 30. \\+Journal of Perinatal Medicine. 2018 Jul 26;46(5):509-521. \\
 ([[http://www.ncbi.nlm.nih.gov/pubmed/28665803|abstract]]) ([[http://dx.doi.org/10.1515/jpm-2017-0126|paper]])  ([[http://www.ncbi.nlm.nih.gov/pubmed/28665803|abstract]]) ([[http://dx.doi.org/10.1515/jpm-2017-0126|paper]]) 
  
-**81. Automated annotation and classification of BI-RADS assessment from radiology reports**. \\+**80. Automated annotation and classification of BI-RADS assessment from radiology reports**. \\
 //Castro, SM, Tseytlin, E, Medvedeva, O, Mitchell, K, __Visweswaran, S__, Bekhuis, T, Jacobson, RS//. \\ //Castro, SM, Tseytlin, E, Medvedeva, O, Mitchell, K, __Visweswaran, S__, Bekhuis, T, Jacobson, RS//. \\
 Journal of Biomedical Informatics. 2017 May;69:177-187. \\ Journal of Biomedical Informatics. 2017 May;69:177-187. \\
 ([[http://www.ncbi.nlm.nih.gov/pubmed/28428140|abstract]]) ([[http://dx.doi.org/10.1016/j.jbi.2017.04.011|paper]]) ([[http://www.ncbi.nlm.nih.gov/pubmed/28428140|abstract]]) ([[http://dx.doi.org/10.1016/j.jbi.2017.04.011|paper]])
- 
-**80. Approximate kernel-based conditional independence tests for fast non-parametric causal discovery**. \\ 
-//Strobl, EV, Zhang, K, __Visweswaran, S__//. \\ 
-arXiv preprint arXiv:1702.03877, 2017. \\ 
-([[https://arxiv.org/abs/1702.03877|abstract & paper]]) 
  
 **79. The building blocks of interoperability: A multisite analysis of patient demographic attributes available for matching**. \\ **79. The building blocks of interoperability: A multisite analysis of patient demographic attributes available for matching**. \\